#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01023/HGDP01023.cram --algo AlignmentStat HGDP/HGDP01023/QCmetrics/HGDP01023.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	446917228	446917228	1.000000	0	446108573	0.998191	66743929779	420133493	63134705583	61997258455	0.000000	0.004344	0.003767	0.000214	151.000000	444653157	0.996738	0	0.499942	0.017502	0.000005	
SECOND_OF_PAIR	446917228	446917228	1.000000	0	444693418	0.995024	65404589032	417792599	61976510254	58414770532	0.000000	0.009857	0.009233	0.000205	151.000000	444653157	0.999909	0	0.499581	0.018943	0.001551	
PAIR	893834456	893834456	1.000000	0	890801991	0.996607	132148518811	837926092	125111215837	120412028987	0.000000	0.007073	0.006475	0.000210	151.000000	889306314	0.998321	0	0.499762	0.018222	0.000778