#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01029/HGDP01029.cram --algo AlignmentStat HGDP/HGDP01029/QCmetrics/HGDP01029.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	836926401	836926401	1.000000	0	835139248	0.997865	124744390294	776451132	116608087741	113688693910	0.000000	0.004975	0.004113	0.000273	151.000000	832914322	0.997336	0	0.498708	0.024917	0.000241	
SECOND_OF_PAIR	836926401	836926401	1.000000	0	832996228	0.995304	122899507381	773132636	115020086250	108347665227	0.000000	0.009167	0.008312	0.000260	151.000000	832914322	0.999902	0	0.498606	0.026169	0.001304	
PAIR	1673852802	1673852802	1.000000	0	1668135476	0.996584	247643897675	1549583768	231628173991	222036359137	0.000000	0.007055	0.006198	0.000266	151.000000	1665828644	0.998617	0	0.498657	0.025542	0.000772