#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01031/HGDP01031.cram --algo AlignmentStat HGDP/HGDP01031/QCmetrics/HGDP01031.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	354865350	354865350	1.000000	0	354144464	0.997969	52860641991	330733194	49532735072	47646825596	0.000000	0.004977	0.004335	0.000225	151.000000	351630473	0.992901	0	0.497449	0.019899	0.001322	
SECOND_OF_PAIR	354865350	354865350	1.000000	0	351674286	0.991008	52289242985	328227315	48989267562	46396904538	0.000000	0.006526	0.005872	0.000222	151.000000	351630473	0.999875	0	0.497572	0.020508	0.001261	
PAIR	709730700	709730700	1.000000	0	705818750	0.994488	105149884976	658960509	98522002634	94043730134	0.000000	0.005747	0.005099	0.000223	151.000000	703260946	0.996376	0	0.497510	0.020203	0.001292