#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01037/HGDP01037.cram --algo AlignmentStat HGDP/HGDP01037/QCmetrics/HGDP01037.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	372521329	372521329	1.000000	0	372283071	0.999360	55490772895	347707690	52033320802	49988936392	0.000000	0.005268	0.004557	0.000221	151.000000	371393376	0.997610	0	0.499189	0.019452	0.000067	
SECOND_OF_PAIR	372521329	372521329	1.000000	0	371416048	0.997033	54478242583	346573390	51087239172	47615246964	0.000000	0.009984	0.009310	0.000220	151.000000	371393376	0.999939	0	0.499294	0.019932	0.000064	
PAIR	745042658	745042658	1.000000	0	743699119	0.998197	109969015478	694281080	103120559974	97604183356	0.000000	0.007604	0.006912	0.000221	151.000000	742786752	0.998773	0	0.499241	0.019691	0.000066