#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01043/HGDP01043.cram --algo AlignmentStat HGDP/HGDP01043/QCmetrics/HGDP01043.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	314652427	314652427	1.000000	0	313672003	0.996884	46774851800	292852595	43807587239	41696632363	0.000000	0.005778	0.005137	0.000204	151.000000	312912456	0.997579	0	0.499112	0.017580	0.000078	
SECOND_OF_PAIR	314652427	314652427	1.000000	0	312940835	0.994560	46023460848	291874004	43099211931	39933912126	0.000000	0.008590	0.007959	0.000203	151.000000	312912456	0.999909	0	0.499101	0.017928	0.000075	
PAIR	629304854	629304854	1.000000	0	626612838	0.995722	92798312648	584726599	86906799170	81630544489	0.000000	0.007173	0.006536	0.000204	151.000000	625824912	0.998743	0	0.499106	0.017754	0.000077