#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01050/HGDP01050.cram --algo AlignmentStat HGDP/HGDP01050/QCmetrics/HGDP01050.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	378420597	378420597	1.000000	0	378195928	0.999406	56383173956	354222612	52995407495	51093692458	0.000000	0.004997	0.004361	0.000215	151.000000	372329749	0.984489	0	0.498863	0.018809	0.000069	
SECOND_OF_PAIR	378420597	378420597	1.000000	0	372352723	0.983965	54799162929	348257575	51518563303	48385028593	0.000000	0.007537	0.006901	0.000214	151.000000	372329749	0.999938	0	0.498941	0.019424	0.000064	
PAIR	756841194	756841194	1.000000	0	750548651	0.991686	111182336885	702480187	104513970798	99478721051	0.000000	0.006249	0.005613	0.000215	151.000000	744659498	0.992154	0	0.498902	0.019114	0.000066