#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01053/HGDP01053.cram --algo AlignmentStat HGDP/HGDP01053/QCmetrics/HGDP01053.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	422373513	422373513	1.000000	0	421889006	0.998853	63027946273	394778246	59284342247	57924323100	0.000000	0.004800	0.004061	0.000225	151.000000	419895991	0.995276	0	0.499997	0.021004	0.000003	
SECOND_OF_PAIR	422373513	422373513	1.000000	0	419927493	0.994209	61586771075	392012699	58042517639	54433812006	0.000000	0.010232	0.009477	0.000214	151.000000	419895991	0.999925	0	0.499477	0.022052	0.000958	
PAIR	844747026	844747026	1.000000	0	841816499	0.996531	124614717348	786790945	117326859886	112358135106	0.000000	0.007484	0.006740	0.000219	151.000000	839791982	0.997595	0	0.499738	0.021527	0.000481