#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01057/HGDP01057.cram --algo AlignmentStat HGDP/HGDP01057/QCmetrics/HGDP01057.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	460820708	460820708	1.000000	0	460534768	0.999379	68849767147	430520451	64671769850	63232120262	0.000000	0.004683	0.003917	0.000225	151.000000	459054328	0.996785	0	0.499998	0.020416	0.000001	
SECOND_OF_PAIR	460820708	460820708	1.000000	0	459086284	0.996236	67517256804	428273010	63529624123	59970073714	0.000000	0.009368	0.008568	0.000215	151.000000	459054328	0.999930	0	0.499457	0.021469	0.000476	
PAIR	921641416	921641416	1.000000	0	919621052	0.997808	136367023951	858793461	128201393973	123202193976	0.000000	0.007002	0.006222	0.000220	151.000000	918108656	0.998355	0	0.499728	0.020942	0.000239