#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01058/HGDP01058.cram --algo AlignmentStat HGDP/HGDP01058/QCmetrics/HGDP01058.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	459612463	459612463	1.000000	0	458816000	0.998267	68636335520	431191299	64771460527	63424227377	0.000000	0.004518	0.003890	0.000219	151.000000	456671066	0.995325	0	0.500040	0.018488	0.000002	
SECOND_OF_PAIR	459612463	459612463	1.000000	0	456710675	0.993686	67124181747	428252090	63431166779	59654206986	0.000000	0.010143	0.009486	0.000211	151.000000	456671066	0.999913	0	0.499477	0.019621	0.000440	
PAIR	919224926	919224926	1.000000	0	915526675	0.995977	135760517267	859443389	128202627306	123078434363	0.000000	0.007299	0.006658	0.000215	151.000000	913342132	0.997614	0	0.499759	0.019053	0.000221