#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01059/HGDP01059.cram --algo AlignmentStat HGDP/HGDP01059/QCmetrics/HGDP01059.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	436146632	436146632	1.000000	0	435633422	0.998823	65128115940	406701137	61084040763	59689455770	0.000000	0.004863	0.004152	0.000216	151.000000	433026332	0.994015	0	0.500046	0.019428	0.000001	
SECOND_OF_PAIR	436146632	436146632	1.000000	0	433058399	0.992919	63441779687	403191007	59614766486	55867804262	0.000000	0.010856	0.010105	0.000208	151.000000	433026332	0.999926	0	0.499455	0.021541	0.000284	
PAIR	872293264	872293264	1.000000	0	868691821	0.995871	128569895627	809892144	120698807249	115557260032	0.000000	0.007820	0.007092	0.000212	151.000000	866052664	0.996962	0	0.499751	0.020482	0.000142