#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP01059/HGDP01059.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01059/QCmetrics/HGDP01059.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 17.398 6.0065 17 3 0 0.13199 0.002976 0.036896 0.0043388 0.0001045 0.17631 0.99834 0.99276 0.94889 0.70926 0.30886 0.075997 0.01706 0.0048599 0.0023773 0.0013146 0.00077717 0.00050173 0.00035239 0.00026504 0.99337 22 coverage high_quality_coverage_count 0 253025 1 175208 2 177898 3 213281 4 282430 5 425542 6 680730 7 1101575 8 1757504 9 2706659 10 3978413 11 5533268 12 7272960 13 9033877 14 10633823 15 11875607 16 12610923 17 12759764 18 12300346 19 11359331 20 10055960 21 8545004 22 7007228 23 5555961 24 4257831 25 3168404 26 2291628 27 1617601 28 1119692 29 767748 30 523071 31 359290 32 250089 33 181821 34 136954 35 108271 36 89934 37 77445 38 68045 39 60937 40 54858 41 49735 42 45700 43 41505 44 37611 45 34761 46 32204 47 29367 48 27046 49 24855 50 22544 51 20723 52 18617 53 17395 54 16004 55 15259 56 14098 57 13156 58 12410 59 11449 60 10577 61 10101 62 9820 63 9024 64 8438 65 7664 66 7228 67 6784 68 6242 69 5869 70 5580 71 5026 72 4854 73 4538 74 4239 75 4028 76 3684 77 3433 78 3347 79 3170 80 2829 81 2795 82 2630 83 2459 84 2311 85 2173 86 1992 87 1929 88 1855 89 1744 90 1656 91 1655 92 1484 93 1445 94 1351 95 1237 96 1176 97 1087 98 1119 99 1077 100 1090 101 1059 102 985 103 951 104 962 105 872 106 840 107 783 108 831 109 798 110 812 111 771 112 733 113 743 114 696 115 711 116 714 117 711 118 733 119 702 120 630 121 619 122 595 123 601 124 570 125 526 126 540 127 543 128 471 129 472 130 461 131 474 132 431 133 391 134 374 135 357 136 349 137 331 138 314 139 301 140 311 141 285 142 310 143 284 144 268 145 277 146 295 147 258 148 238 149 255 150 238 151 203 152 211 153 202 154 192 155 216 156 175 157 153 158 190 159 178 160 174 161 169 162 156 163 196 164 160 165 142 166 159 167 129 168 172 169 139 170 140 171 143 172 155 173 140 174 138 175 139 176 118 177 119 178 122 179 122 180 114 181 103 182 113 183 101 184 84 185 72 186 78 187 64 188 83 189 67 190 72 191 74 192 90 193 77 194 79 195 88 196 74 197 80 198 72 199 64 200 90 201 83 202 70 203 59 204 55 205 67 206 81 207 65 208 52 209 83 210 70 211 64 212 61 213 52 214 57 215 57 216 47 217 56 218 67 219 64 220 51 221 54 222 53 223 64 224 38 225 42 226 53 227 57 228 56 229 51 230 48 231 61 232 40 233 28 234 42 235 41 236 38 237 28 238 43 239 44 240 43 241 45 242 40 243 41 244 40 245 37 246 33 247 35 248 29 249 19 250 2555