#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP01059/HGDP01059.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01059/QCmetrics/HGDP01059.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 20.818 24.973 17 3 0 0.082941 0.002889 0.055355 0.0098154 0.29871 0.44971 0.99907 0.99403 0.94709 0.70746 0.32384 0.10819 0.052926 0.036052 0.028604 0.02321 0.019529 0.017151 0.015567 0.014433 0.9938 22 coverage high_quality_coverage_count 0 22006 1 20194 2 22362 3 30608 4 45912 5 70653 6 115156 7 187066 8 291400 9 445289 10 638699 11 874669 12 1135829 13 1391868 14 1622974 15 1799412 16 1896712 17 1899907 18 1810507 19 1660810 20 1461889 21 1233610 22 1005804 23 789842 24 605930 25 451836 26 329153 27 235887 28 168377 29 121027 30 87129 31 64295 32 49530 33 40032 34 33862 35 29421 36 26448 37 24195 38 22432 39 21478 40 20271 41 19523 42 19115 43 18260 44 17460 45 17405 46 16804 47 16309 48 15677 49 15227 50 14712 51 14178 52 13850 53 13286 54 12913 55 12723 56 12016 57 11725 58 11281 59 10802 60 10671 61 10069 62 9882 63 9207 64 8805 65 8264 66 8134 67 7707 68 7279 69 7007 70 6912 71 6516 72 6044 73 5877 74 5711 75 5342 76 5387 77 5057 78 4816 79 4539 80 4479 81 4192 82 4150 83 3882 84 3780 85 3647 86 3575 87 3329 88 3283 89 3125 90 2969 91 3050 92 2880 93 2803 94 2691 95 2578 96 2594 97 2490 98 2416 99 2316 100 2275 101 2314 102 2239 103 2112 104 2105 105 2016 106 1935 107 1932 108 1906 109 1934 110 1801 111 1801 112 1763 113 1676 114 1673 115 1641 116 1587 117 1553 118 1508 119 1458 120 1514 121 1504 122 1489 123 1496 124 1463 125 1491 126 1398 127 1340 128 1279 129 1286 130 1283 131 1272 132 1345 133 1214 134 1195 135 1247 136 1208 137 1153 138 1243 139 1163 140 1132 141 1183 142 1128 143 1175 144 1161 145 1179 146 1088 147 1122 148 1136 149 1154 150 1137 151 1098 152 1137 153 1082 154 1101 155 1005 156 1071 157 1080 158 1099 159 1086 160 1094 161 1126 162 1147 163 1140 164 1137 165 1153 166 1130 167 1123 168 1103 169 1202 170 1086 171 1106 172 1100 173 1078 174 1144 175 1076 176 1023 177 1031 178 1025 179 1000 180 968 181 935 182 890 183 946 184 946 185 915 186 859 187 861 188 803 189 805 190 731 191 772 192 772 193 755 194 796 195 753 196 711 197 702 198 664 199 679 200 640 201 628 202 648 203 647 204 649 205 629 206 656 207 630 208 628 209 586 210 693 211 641 212 592 213 599 214 632 215 614 216 612 217 657 218 641 219 634 220 625 221 626 222 596 223 635 224 638 225 592 226 643 227 596 228 594 229 612 230 627 231 607 232 583 233 629 234 612 235 579 236 600 237 575 238 546 239 545 240 534 241 562 242 555 243 484 244 550 245 510 246 504 247 511 248 513 249 513 250 186748