#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01062/HGDP01062.cram --algo AlignmentStat HGDP/HGDP01062/QCmetrics/HGDP01062.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	416188830	416188830	1.000000	0	415737355	0.998915	62197116145	391396070	58801594683	57320785936	0.000000	0.004863	0.004259	0.000212	151.000000	414544509	0.997131	0	0.500009	0.017580	0.000003	
SECOND_OF_PAIR	416188830	416188830	1.000000	0	414575816	0.996124	60895484804	389400610	57658099711	53678262579	0.000000	0.010812	0.010179	0.000202	151.000000	414544509	0.999924	0	0.499486	0.018821	0.000892	
PAIR	832377660	832377660	1.000000	0	830313171	0.997520	123092600949	780796680	116459694394	110999048515	0.000000	0.007806	0.007190	0.000207	151.000000	829089018	0.998526	0	0.499748	0.018200	0.000447