#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01063/HGDP01063.cram --algo AlignmentStat HGDP/HGDP01063/QCmetrics/HGDP01063.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	397297949	397297949	1.000000	0	397123610	0.999561	59332875692	370903430	55691510766	54242251345	0.000000	0.005199	0.004419	0.000223	151.000000	395450644	0.995787	0	0.500023	0.022267	0.000001	
SECOND_OF_PAIR	397297949	397297949	1.000000	0	395476559	0.995416	57875541877	368172779	54409251149	50326553575	0.000000	0.012173	0.011358	0.000212	151.000000	395450644	0.999934	0	0.499066	0.023679	0.000225	
PAIR	794595898	794595898	1.000000	0	792600169	0.997488	117208417569	739076209	110100761915	104568804920	0.000000	0.008643	0.007847	0.000217	151.000000	790901288	0.997857	0	0.499545	0.022972	0.000113