#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP01063/HGDP01063.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01063/QCmetrics/HGDP01063.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	20.351	24.871	17	3	0	0.057766	0.0021857	0.064366	0.0074395	0.32304	0.4548	0.99857	0.99325	0.94546	0.67972	0.28521	0.092815	0.050313	0.036479	0.029207	0.023179	0.018907	0.016386	0.01496	0.014026	0.99315	22	

coverage	high_quality_coverage_count	
0	33823
1	26085
2	24233
3	31224
4	44266
5	67762
6	110758
7	184090
8	298698
9	468272
10	697587
11	971306
12	1270491
13	1552248
14	1789355
15	1947557
16	1995048
17	1951211
18	1818707
19	1612228
20	1370363
21	1122103
22	884659
23	672498
24	497974
25	357795
26	253321
27	178254
28	125268
29	89958
30	67304
31	51019
32	39964
33	32790
34	27995
35	24894
36	22945
37	20956
38	20072
39	19036
40	18592
41	18298
42	18050
43	17593
44	17090
45	16851
46	16842
47	16605
48	16080
49	15890
50	15773
51	15682
52	15119
53	14808
54	14435
55	14242
56	13737
57	13276
58	13047
59	12366
60	12090
61	11838
62	11038
63	10516
64	10334
65	9946
66	9575
67	8861
68	8683
69	8081
70	7796
71	7283
72	6820
73	6341
74	6178
75	5575
76	5371
77	5015
78	4767
79	4442
80	4287
81	4072
82	3870
83	3600
84	3361
85	3171
86	3067
87	2847
88	2743
89	2688
90	2446
91	2396
92	2422
93	2320
94	2214
95	2083
96	2139
97	2117
98	2001
99	1941
100	1888
101	1829
102	1807
103	1753
104	1753
105	1671
106	1706
107	1660
108	1598
109	1570
110	1579
111	1512
112	1597
113	1454
114	1500
115	1498
116	1476
117	1505
118	1485
119	1388
120	1420
121	1376
122	1409
123	1357
124	1301
125	1307
126	1323
127	1355
128	1325
129	1332
130	1332
131	1291
132	1269
133	1242
134	1284
135	1270
136	1230
137	1280
138	1273
139	1272
140	1149
141	1180
142	1228
143	1258
144	1219
145	1213
146	1239
147	1200
148	1214
149	1189
150	1139
151	1128
152	1188
153	1131
154	1121
155	1100
156	1077
157	1068
158	1061
159	1005
160	986
161	954
162	952
163	961
164	987
165	952
166	983
167	902
168	951
169	869
170	890
171	907
172	858
173	885
174	906
175	883
176	864
177	844
178	829
179	804
180	764
181	747
182	791
183	802
184	848
185	762
186	767
187	796
188	761
189	787
190	747
191	724
192	798
193	743
194	803
195	706
196	753
197	695
198	763
199	734
200	708
201	671
202	677
203	651
204	685
205	678
206	690
207	697
208	681
209	721
210	724
211	696
212	665
213	687
214	669
215	672
216	658
217	691
218	630
219	680
220	647
221	665
222	677
223	653
224	615
225	638
226	652
227	614
228	596
229	627
230	587
231	575
232	565
233	542
234	578
235	551
236	519
237	540
238	487
239	551
240	500
241	498
242	513
243	495
244	466
245	519
246	480
247	485
248	448
249	434
250	186137