#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01064/HGDP01064.cram --algo AlignmentStat HGDP/HGDP01064/QCmetrics/HGDP01064.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	389716317	389716317	1.000000	0	389161706	0.998577	58193538830	366635880	55059911423	53651501798	0.000000	0.004892	0.004280	0.000211	151.000000	386843895	0.994044	0	0.500061	0.017588	0.000004	
SECOND_OF_PAIR	389716317	389716317	1.000000	0	386872432	0.992703	56388180454	363444715	53461985851	49172019962	1.000000	0.012363	0.011752	0.000200	151.000000	386843895	0.999926	0	0.499474	0.019061	0.000687	
PAIR	779432634	779432634	1.000000	0	776034138	0.995640	114581719284	730080595	108521897274	102823521760	0.000000	0.008568	0.007961	0.000206	151.000000	773687790	0.996976	0	0.499769	0.018322	0.000345