#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01065/HGDP01065.cram --algo AlignmentStat HGDP/HGDP01065/QCmetrics/HGDP01065.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	401847083	401847083	1.000000	0	401553738	0.999270	60033672783	377245787	56656369208	55198337468	0.000000	0.005297	0.004652	0.000215	151.000000	400230578	0.996705	0	0.499998	0.018984	0.000002	
SECOND_OF_PAIR	401847083	401847083	1.000000	0	400257804	0.996045	58735176397	375174220	55537313263	51718546389	0.000000	0.011291	0.010624	0.000202	151.000000	400230578	0.999932	0	0.499542	0.020272	0.000514	
PAIR	803694166	803694166	1.000000	0	801811542	0.997658	118768849180	752420007	112193682471	106916883857	0.000000	0.008261	0.007608	0.000209	151.000000	800461156	0.998316	0	0.499770	0.019627	0.000258