#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01066/HGDP01066.cram --algo AlignmentStat HGDP/HGDP01066/QCmetrics/HGDP01066.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	389088328	389088328	1.000000	0	388569145	0.998666	57907853881	363284950	54425357628	52714909085	0.000000	0.005972	0.005216	0.000226	151.000000	386599363	0.994931	0	0.499983	0.021135	0.000003	
SECOND_OF_PAIR	389088328	389088328	1.000000	0	386628952	0.993679	56097938385	360413431	52833516320	48244400935	1.000000	0.013665	0.012932	0.000213	151.000000	386599363	0.999923	0	0.499415	0.022485	0.001116	
PAIR	778176656	778176656	1.000000	0	775198097	0.996172	114005792266	723698381	107258873948	100959310020	0.000000	0.009757	0.009016	0.000219	151.000000	773198726	0.997421	0	0.499700	0.021809	0.000560