#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01067/HGDP01067.cram --algo AlignmentStat HGDP/HGDP01067/QCmetrics/HGDP01067.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	420867749	420867749	1.000000	0	419140708	0.995896	62639386243	393330833	59061913799	57418928517	0.000000	0.005688	0.004976	0.000219	151.000000	417729944	0.996634	0	0.499921	0.019653	0.000003	
SECOND_OF_PAIR	420867749	420867749	1.000000	0	417777922	0.992658	61267779052	391166891	57862568956	53819209727	0.000000	0.011536	0.010807	0.000206	151.000000	417729944	0.999885	0	0.499509	0.020884	0.000798	
PAIR	841735498	841735498	1.000000	0	836918630	0.994277	123907165295	784497724	116924482755	111238138244	0.000000	0.008579	0.007862	0.000213	151.000000	835459888	0.998257	0	0.499715	0.020268	0.000400