#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01068/HGDP01068.cram --algo AlignmentStat HGDP/HGDP01068/QCmetrics/HGDP01068.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	484223059	484223059	1.000000	0	483774312	0.999073	72322867727	454716096	68282579628	66509781639	0.000000	0.005266	0.004621	0.000215	151.000000	481994088	0.996320	0	0.500045	0.018746	0.000003	
SECOND_OF_PAIR	484223059	484223059	1.000000	0	482026856	0.995464	70487131904	451910684	66664629067	61498482404	0.000000	0.012397	0.011744	0.000202	151.000000	481994088	0.999932	0	0.499523	0.020591	0.000695	
PAIR	968446118	968446118	1.000000	0	965801168	0.997269	142809999631	906626780	134947208695	128008264043	0.000000	0.008785	0.008140	0.000208	151.000000	963988176	0.998123	0	0.499784	0.019667	0.000349