#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01070/HGDP01070.cram --algo AlignmentStat HGDP/HGDP01070/QCmetrics/HGDP01070.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	481994869	481994869	1.000000	0	480211716	0.996300	71814251379	450928614	67732625172	66002848700	0.000000	0.004973	0.004343	0.000217	151.000000	478620049	0.996685	0	0.499966	0.018504	0.000001	
SECOND_OF_PAIR	481994869	481994869	1.000000	0	478674243	0.993111	70133295796	448354895	66254236783	61334394800	0.000000	0.011559	0.010903	0.000206	151.000000	478620049	0.999887	0	0.499537	0.020028	0.000313	
PAIR	963989738	963989738	1.000000	0	958885959	0.994706	141947547175	899283509	133986861955	127337243500	0.000000	0.008227	0.007587	0.000211	151.000000	957240098	0.998284	0	0.499752	0.019265	0.000157