#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01071/HGDP01071.cram --algo AlignmentStat HGDP/HGDP01071/QCmetrics/HGDP01071.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	544824687	544824687	1.000000	0	544586269	0.999562	81359079531	508039325	76266039078	74215382434	0.000000	0.005341	0.004547	0.000222	151.000000	542028135	0.995303	0	0.500020	0.021982	0.000001	
SECOND_OF_PAIR	544824687	544824687	1.000000	0	542063690	0.994932	79211342465	503950176	74346449608	68412941980	1.000000	0.012889	0.012063	0.000211	151.000000	542028135	0.999934	0	0.498991	0.023897	0.000121	
PAIR	1089649374	1089649374	1.000000	0	1086649959	0.997247	160570421996	1011989501	150612488686	142628324414	0.000000	0.009064	0.008257	0.000217	151.000000	1084056270	0.997613	0	0.499507	0.022937	0.000061