#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01072/HGDP01072.cram --algo AlignmentStat HGDP/HGDP01072/QCmetrics/HGDP01072.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	563986935	563986935	1.000000	0	561316924	0.995266	83868665728	526252968	79014858362	76974384310	0.000000	0.005022	0.004331	0.000216	151.000000	558048919	0.994178	0	0.500137	0.019734	0.000002	
SECOND_OF_PAIR	563986935	563986935	1.000000	0	558119005	0.989596	81304862085	521800635	76769455323	70652217899	1.000000	0.012410	0.011730	0.000205	151.000000	558048919	0.999874	0	0.499382	0.021399	0.000389	
PAIR	1127973870	1127973870	1.000000	0	1119435929	0.992431	165173527813	1048053603	155784313685	147626602209	0.000000	0.008658	0.007977	0.000211	151.000000	1116097838	0.997018	0	0.499761	0.020565	0.000195