#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01073/HGDP01073.cram --algo AlignmentStat HGDP/HGDP01073/QCmetrics/HGDP01073.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	451763002	451763002	1.000000	0	451528552	0.999481	67488422169	423231308	63547776021	61887129820	0.000000	0.005439	0.004727	0.000218	151.000000	449855289	0.996294	0	0.500025	0.020079	0.000002	
SECOND_OF_PAIR	451763002	451763002	1.000000	0	449883519	0.995840	65961451912	420655454	62216710338	57828723987	0.000000	0.011627	0.010890	0.000206	151.000000	449855289	0.999937	0	0.499467	0.021934	0.000284	
PAIR	903526004	903526004	1.000000	0	901412071	0.997660	133449874081	843886762	125764486359	119715853807	0.000000	0.008497	0.007775	0.000212	151.000000	899710578	0.998112	0	0.499746	0.021005	0.000143