#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP01073/HGDP01073.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01073/QCmetrics/HGDP01073.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 19.538 5.952 19 3 0 0.074398 0.0018375 0.044181 0.0026738 0.00012487 0.12322 0.9984 0.99329 0.97419 0.84355 0.48739 0.15619 0.031249 0.0036787 0.0014509 0.00077018 0.0005152 0.00038722 0.00030578 0.000244 0.99503 23 coverage high_quality_coverage_count 0 244058 1 173001 2 178410 3 198292 4 226509 5 273625 6 349622 7 479447 8 710257 9 1092560 10 1694053 11 2561746 12 3720265 13 5137851 14 6759175 15 8445162 16 10009665 17 11269057 18 12077234 19 12375199 20 12142729 21 11401851 22 10326713 23 8986011 24 7523762 25 6078195 26 4754093 27 3602749 28 2658235 29 1911354 30 1337476 31 921893 32 626648 33 422091 34 287901 35 198800 36 142701 37 106314 38 82779 39 67279 40 56397 41 49130 42 43130 43 37482 44 33630 45 29713 46 26615 47 23633 48 20688 49 18457 50 16769 51 14495 52 13033 53 11792 54 10479 55 9183 56 8150 57 7238 58 6617 59 5793 60 5360 61 4982 62 4475 63 4166 64 3861 65 3679 66 3427 67 3126 68 3001 69 2708 70 2576 71 2453 72 2243 73 2085 74 1976 75 1742 76 1678 77 1649 78 1577 79 1489 80 1511 81 1420 82 1322 83 1256 84 1272 85 1137 86 1175 87 1121 88 1108 89 1067 90 1053 91 1013 92 1009 93 963 94 891 95 957 96 872 97 905 98 873 99 861 100 833 101 713 102 751 103 709 104 656 105 650 106 677 107 634 108 571 109 584 110 591 111 600 112 592 113 520 114 510 115 512 116 505 117 396 118 452 119 376 120 427 121 403 122 404 123 400 124 391 125 366 126 376 127 345 128 331 129 304 130 329 131 269 132 312 133 329 134 290 135 330 136 268 137 279 138 306 139 288 140 226 141 250 142 224 143 216 144 233 145 227 146 244 147 259 148 233 149 260 150 250 151 262 152 218 153 236 154 246 155 239 156 237 157 201 158 208 159 206 160 205 161 216 162 181 163 214 164 206 165 217 166 215 167 212 168 208 169 196 170 213 171 209 172 212 173 217 174 168 175 194 176 215 177 191 178 185 179 164 180 167 181 184 182 173 183 177 184 168 185 138 186 149 187 150 188 151 189 116 190 121 191 142 192 128 193 138 194 140 195 124 196 133 197 107 198 114 199 107 200 120 201 101 202 99 203 101 204 90 205 85 206 79 207 76 208 76 209 71 210 74 211 61 212 74 213 74 214 83 215 88 216 76 217 67 218 76 219 76 220 67 221 70 222 64 223 65 224 72 225 68 226 59 227 72 228 61 229 59 230 40 231 57 232 39 233 50 234 46 235 51 236 57 237 38 238 55 239 52 240 62 241 59 242 53 243 47 244 59 245 44 246 64 247 46 248 56 249 59 250 3659