#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01074/HGDP01074.cram --algo AlignmentStat HGDP/HGDP01074/QCmetrics/HGDP01074.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	410405891	410405891	1.000000	0	410256012	0.999635	61155913497	384752305	57635029752	55783700333	0.000000	0.005904	0.005243	0.000221	151.000000	407854632	0.994147	0	0.500088	0.019902	0.000001	
SECOND_OF_PAIR	410405891	410405891	1.000000	0	407878948	0.993843	59095523242	381311319	55802407022	50737161789	1.000000	0.014100	0.013462	0.000208	151.000000	407854632	0.999940	0	0.499365	0.021312	0.000190	
PAIR	820811782	820811782	1.000000	0	818134960	0.996739	120251436739	766063624	113437436774	106520862122	0.000000	0.009931	0.009286	0.000215	151.000000	815709264	0.997035	0	0.499728	0.020605	0.000096