#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01075/HGDP01075.cram --algo AlignmentStat HGDP/HGDP01075/QCmetrics/HGDP01075.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	433459854	433459854	1.000000	0	433047530	0.999049	64721620634	406127132	60978798429	59265984667	0.000000	0.005694	0.004974	0.000217	151.000000	431452832	0.996317	0	0.499972	0.019373	0.000003	
SECOND_OF_PAIR	433459854	433459854	1.000000	0	431483322	0.995440	63157817923	403680894	59610407093	55188137556	0.000000	0.012145	0.011415	0.000204	151.000000	431452832	0.999929	0	0.499483	0.020889	0.000733	
PAIR	866919708	866919708	1.000000	0	864530852	0.997244	127879438557	809808026	120589205522	114454122223	0.000000	0.008880	0.008158	0.000211	151.000000	862905664	0.998120	0	0.499728	0.020130	0.000368