#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP01075/HGDP01075.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01075/QCmetrics/HGDP01075.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 18.737 5.7571 19 3 0 0.068426 0.0018302 0.046919 0.0024055 0.00015038 0.11973 0.99842 0.99353 0.97017 0.80699 0.42049 0.11753 0.021111 0.0027633 0.0012743 0.00074501 0.00050088 0.00037419 0.00029125 0.00023059 0.99482 23 coverage high_quality_coverage_count 0 240414 1 168361 2 165167 3 186242 4 224003 5 284232 6 386125 7 570600 8 893947 9 1417859 10 2208358 11 3310694 12 4729812 13 6399833 14 8173883 15 9879908 16 11307625 17 12302979 18 12734123 19 12567914 20 11879199 21 10750340 22 9339796 23 7808943 24 6306088 25 4924865 26 3721521 27 2727730 28 1943779 29 1348685 30 920322 31 618807 32 410436 33 273926 34 183321 35 127308 36 91427 37 68393 38 53612 39 43420 40 36727 41 31642 42 27860 43 24610 44 22290 45 20119 46 18461 47 16736 48 14807 49 13246 50 11975 51 10744 52 9475 53 8754 54 8044 55 7539 56 6885 57 6166 58 5696 59 5241 60 5058 61 4530 62 4487 63 4006 64 3733 65 3522 66 3338 67 3101 68 2786 69 2575 70 2410 71 2210 72 2149 73 1969 74 1980 75 1881 76 1747 77 1727 78 1618 79 1580 80 1538 81 1444 82 1343 83 1364 84 1222 85 1210 86 1213 87 1131 88 1110 89 1041 90 1010 91 1030 92 960 93 992 94 958 95 916 96 843 97 888 98 826 99 805 100 786 101 750 102 672 103 690 104 750 105 682 106 691 107 687 108 643 109 631 110 589 111 525 112 541 113 530 114 513 115 447 116 473 117 437 118 454 119 405 120 408 121 374 122 326 123 365 124 341 125 339 126 351 127 354 128 326 129 342 130 311 131 323 132 300 133 343 134 323 135 317 136 284 137 263 138 298 139 259 140 286 141 259 142 233 143 230 144 225 145 194 146 183 147 168 148 168 149 176 150 147 151 165 152 170 153 146 154 150 155 144 156 149 157 151 158 149 159 170 160 159 161 166 162 168 163 144 164 158 165 137 166 176 167 164 168 173 169 155 170 167 171 152 172 149 173 145 174 141 175 139 176 133 177 155 178 140 179 164 180 165 181 168 182 161 183 156 184 161 185 163 186 152 187 162 188 160 189 169 190 142 191 167 192 142 193 168 194 144 195 119 196 115 197 103 198 114 199 97 200 94 201 111 202 103 203 94 204 82 205 84 206 81 207 71 208 78 209 68 210 76 211 69 212 98 213 71 214 61 215 56 216 66 217 66 218 58 219 55 220 62 221 50 222 54 223 64 224 70 225 69 226 40 227 44 228 43 229 46 230 40 231 33 232 49 233 24 234 33 235 47 236 42 237 20 238 29 239 42 240 47 241 32 242 50 243 37 244 42 245 42 246 35 247 37 248 47 249 40 250 4105