#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01086/HGDP01086.cram --algo AlignmentStat HGDP/HGDP01086/QCmetrics/HGDP01086.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	414585452	414585452	1.000000	0	414132342	0.998907	61788668099	385687335	57794396060	55686871559	0.000000	0.005686	0.004925	0.000245	151.000000	407012363	0.982807	0	0.498920	0.022571	0.000619	
SECOND_OF_PAIR	414585452	414585452	1.000000	0	407097505	0.981939	59240414416	378179735	55412546663	50548579506	0.000000	0.010707	0.009970	0.000237	151.000000	407012363	0.999791	0	0.498775	0.023391	0.000537	
PAIR	829170904	829170904	1.000000	0	821229847	0.990423	121029082515	763867070	113206942723	106235451065	0.000000	0.008143	0.007395	0.000241	151.000000	814024726	0.991226	0	0.498848	0.022978	0.000578