#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01087/HGDP01087.cram --algo AlignmentStat HGDP/HGDP01087/QCmetrics/HGDP01087.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	367023206	367023206	1.000000	0	366528895	0.998653	54543624174	341502401	51032983088	48998547226	0.000000	0.005560	0.004831	0.000239	151.000000	359451104	0.980690	0	0.498942	0.020998	0.000125	
SECOND_OF_PAIR	367023206	367023206	1.000000	0	359472731	0.979428	52414132814	334388624	49039994711	45409693015	0.000000	0.009784	0.009055	0.000232	151.000000	359451104	0.999940	0	0.498668	0.021808	0.000113	
PAIR	734046412	734046412	1.000000	0	726001626	0.989040	106957756988	675891025	100072977799	94408240241	0.000000	0.007629	0.006901	0.000236	151.000000	718902208	0.990221	0	0.498807	0.021400	0.000119