#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01090/HGDP01090.cram --algo AlignmentStat HGDP/HGDP01090/QCmetrics/HGDP01090.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	351333363	351333363	1.000000	0	351227432	0.999698	52138817470	326710941	48670124731	46607720815	0.000000	0.006370	0.005600	0.000247	151.000000	349018643	0.993711	0	0.493904	0.028424	0.000044	
SECOND_OF_PAIR	351333363	351333363	1.000000	0	349040523	0.993474	51571711699	324228741	48148035157	44530709354	0.000000	0.009819	0.009058	0.000236	151.000000	349018643	0.999937	0	0.494292	0.029073	0.000041	
PAIR	702666726	702666726	1.000000	0	700267955	0.996586	103710529169	650939682	96818159888	91138430169	0.000000	0.008085	0.007319	0.000242	151.000000	698037286	0.996815	0	0.494097	0.028748	0.000042