#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01092/HGDP01092.cram --algo AlignmentStat HGDP/HGDP01092/QCmetrics/HGDP01092.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	408630235	408630235	1.000000	0	408394513	0.999423	60858500595	379167211	56739297819	54260440711	0.000000	0.006881	0.006124	0.000241	151.000000	399525352	0.978283	0	0.498882	0.022585	0.000165	
SECOND_OF_PAIR	408630235	408630235	1.000000	0	399559647	0.977802	57560667121	369695786	53663046680	48414479124	0.000000	0.012810	0.012062	0.000237	151.000000	399525352	0.999914	0	0.498561	0.023366	0.000148	
PAIR	817260470	817260470	1.000000	0	807954160	0.988613	118419167716	748862997	110402344499	102674919835	0.000000	0.009762	0.009010	0.000239	151.000000	799050704	0.988980	0	0.498723	0.022972	0.000156