#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01094/HGDP01094.cram --algo AlignmentStat HGDP/HGDP01094/QCmetrics/HGDP01094.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	391543232	391543232	1.000000	0	391447815	0.999756	58487370971	363092019	54450563384	52458890566	0.000000	0.005221	0.004435	0.000247	151.000000	390776952	0.998286	0	0.493819	0.028911	0.000051	
SECOND_OF_PAIR	391543232	391543232	1.000000	0	390799934	0.998102	57878129775	362174100	53884208573	50548758515	0.000000	0.008087	0.007320	0.000240	151.000000	390776952	0.999941	0	0.493956	0.029389	0.000049	
PAIR	783086464	783086464	1.000000	0	782247749	0.998929	116365500746	725266119	108334771957	103007649081	0.000000	0.006646	0.005870	0.000243	151.000000	781553904	0.999113	0	0.493887	0.029150	0.000050