#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP01094/HGDP01094.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01094/QCmetrics/HGDP01094.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 21.489 27.589 17 4 0 0.089496 0.00094805 0.049375 0.0075427 0.34657 0.49393 0.99419 0.98325 0.92534 0.68718 0.32196 0.11191 0.056517 0.040296 0.035593 0.032554 0.030076 0.027762 0.025559 0.023394 0.98604 19 coverage high_quality_coverage_count 0 137432 1 53965 2 54424 3 63880 4 86094 5 118888 6 167581 7 242974 8 347808 9 491675 10 676172 11 894562 12 1128472 13 1362456 14 1567501 15 1722899 16 1800128 17 1800108 18 1723488 19 1585802 20 1403915 21 1195773 22 982462 23 781450 24 601360 25 447940 26 328619 27 238071 28 171609 29 123002 30 89889 31 67026 32 50396 33 39811 34 31906 35 26938 36 23368 37 20328 38 17652 39 16079 40 14667 41 13368 42 12519 43 11753 44 10992 45 10373 46 9996 47 9505 48 9218 49 8782 50 8414 51 8124 52 7820 53 7419 54 7080 55 6889 56 6691 57 6481 58 6478 59 6417 60 6262 61 6256 62 6014 63 5885 64 5778 65 5690 66 5767 67 5676 68 5544 69 5703 70 5572 71 5629 72 5535 73 5583 74 5592 75 5350 76 5468 77 5325 78 5243 79 5395 80 5323 81 5271 82 5334 83 5246 84 5246 85 5215 86 5143 87 5181 88 5105 89 5013 90 5025 91 5091 92 5038 93 5048 94 5014 95 5155 96 5123 97 5179 98 5243 99 5268 100 5290 101 5302 102 5230 103 5198 104 5390 105 5157 106 5124 107 5029 108 5105 109 5053 110 4991 111 4955 112 4914 113 4782 114 4749 115 4674 116 4474 117 4583 118 4597 119 4554 120 4519 121 4577 122 4508 123 4418 124 4501 125 4543 126 4505 127 4506 128 4373 129 4371 130 4242 131 4203 132 4219 133 4230 134 4318 135 4269 136 4265 137 4363 138 4281 139 4122 140 4017 141 4086 142 4031 143 3993 144 3862 145 3810 146 3845 147 3729 148 3766 149 3648 150 3644 151 3444 152 3418 153 3295 154 3316 155 3335 156 3244 157 3142 158 3057 159 2841 160 2882 161 2895 162 2770 163 2733 164 2662 165 2549 166 2505 167 2389 168 2276 169 2238 170 2151 171 2060 172 1945 173 1853 174 1877 175 1773 176 1736 177 1668 178 1718 179 1738 180 1617 181 1703 182 1603 183 1539 184 1476 185 1498 186 1382 187 1385 188 1384 189 1303 190 1289 191 1276 192 1221 193 1109 194 1208 195 1168 196 1078 197 1149 198 1056 199 1086 200 1091 201 1017 202 1040 203 1030 204 982 205 953 206 936 207 843 208 893 209 845 210 848 211 819 212 856 213 783 214 801 215 744 216 800 217 739 218 731 219 660 220 722 221 653 222 616 223 661 224 636 225 630 226 609 227 602 228 600 229 617 230 580 231 587 232 530 233 570 234 569 235 529 236 580 237 561 238 509 239 535 240 529 241 519 242 561 243 493 244 481 245 488 246 478 247 452 248 485 249 436 250 189754