#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01096/HGDP01096.cram --algo AlignmentStat HGDP/HGDP01096/QCmetrics/HGDP01096.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	366554760	366554760	1.000000	0	366136697	0.998859	54439994075	340985888	50925906276	49004787846	0.000000	0.005377	0.004674	0.000217	151.000000	363208936	0.992004	0	0.491824	0.033034	0.000096	
SECOND_OF_PAIR	366554760	366554760	1.000000	0	363232699	0.990937	52936813577	337492501	49472871714	46331105403	0.000000	0.010134	0.009442	0.000219	151.000000	363208936	0.999935	0	0.492503	0.033788	0.000091	
PAIR	733109520	733109520	1.000000	0	729369396	0.994898	107376807652	678478389	100398777990	95335893249	0.000000	0.007722	0.007023	0.000218	151.000000	726417872	0.995953	0	0.492162	0.033410	0.000094