#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01097/HGDP01097.cram --algo AlignmentStat HGDP/HGDP01097/QCmetrics/HGDP01097.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	394373510	394373510	1.000000	0	393815935	0.998586	58277532059	367706396	54628420856	52472985885	0.000000	0.006484	0.005854	0.000211	151.000000	388253342	0.985875	0	0.491782	0.030130	0.000109	
SECOND_OF_PAIR	394373510	394373510	1.000000	0	388277385	0.984542	54515765896	360466104	50932007228	47611133210	0.000000	0.010360	0.009679	0.000210	151.000000	388253342	0.999938	0	0.492498	0.030606	0.000103	
PAIR	788747020	788747020	1.000000	0	782093320	0.991564	112793297955	728172500	105560428084	100084119095	0.000000	0.008357	0.007699	0.000211	151.000000	776506684	0.992857	0	0.492137	0.030367	0.000106