#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP01097/HGDP01097.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01097/QCmetrics/HGDP01097.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 19.88 24.066 17 4 0 0.060259 0.0047148 0.051531 0.0086004 0.3057 0.43081 0.9969 0.98659 0.91936 0.65557 0.28957 0.097145 0.047741 0.03116 0.025677 0.022392 0.019791 0.017486 0.015607 0.01405 0.98864 19 coverage high_quality_coverage_count 0 73295 1 44649 2 50974 3 61658 4 86398 5 127640 6 190576 7 281163 8 409456 9 580189 10 789188 11 1022197 12 1262058 13 1489257 14 1672465 15 1793697 16 1837390 17 1803564 18 1691117 19 1525123 20 1317703 21 1104537 22 891780 23 700555 24 533579 25 397523 26 290708 27 212832 28 154178 29 112474 30 82647 31 63124 32 50155 33 40994 34 34391 35 30487 36 26072 37 23888 38 21406 39 18770 40 17136 41 15521 42 14831 43 13982 44 13406 45 12644 46 11729 47 10796 48 10105 49 9432 50 8913 51 8476 52 8138 53 7964 54 7840 55 7846 56 7484 57 7154 58 7018 59 6825 60 6838 61 6523 62 6347 63 6355 64 6095 65 5963 66 5854 67 6050 68 5803 69 5653 70 5718 71 5626 72 5525 73 5560 74 5520 75 5515 76 5439 77 5242 78 5141 79 5177 80 4871 81 4817 82 4820 83 4591 84 4390 85 4371 86 4224 87 4286 88 4021 89 4023 90 4006 91 3994 92 3964 93 3797 94 3641 95 3581 96 3594 97 3544 98 3432 99 3255 100 3121 101 3007 102 2975 103 2895 104 2714 105 2703 106 2562 107 2483 108 2440 109 2365 110 2301 111 2319 112 2153 113 2165 114 2227 115 2028 116 2026 117 2038 118 1986 119 2021 120 1941 121 2000 122 1821 123 1911 124 1842 125 1854 126 1822 127 1693 128 1737 129 1659 130 1715 131 1622 132 1688 133 1623 134 1578 135 1587 136 1515 137 1530 138 1517 139 1470 140 1456 141 1426 142 1402 143 1374 144 1428 145 1415 146 1371 147 1307 148 1373 149 1303 150 1281 151 1256 152 1192 153 1178 154 1167 155 1116 156 1070 157 1115 158 1052 159 1036 160 1027 161 1054 162 1027 163 979 164 1014 165 989 166 1013 167 1003 168 1001 169 1011 170 971 171 1010 172 889 173 888 174 926 175 901 176 896 177 847 178 843 179 851 180 860 181 855 182 860 183 855 184 819 185 838 186 845 187 782 188 818 189 745 190 695 191 719 192 693 193 651 194 664 195 615 196 653 197 576 198 562 199 609 200 584 201 505 202 514 203 566 204 455 205 481 206 477 207 435 208 481 209 477 210 449 211 437 212 454 213 417 214 399 215 416 216 370 217 425 218 451 219 431 220 345 221 394 222 373 223 348 224 364 225 373 226 345 227 373 228 342 229 361 230 332 231 340 232 370 233 345 234 316 235 311 236 320 237 325 238 319 239 338 240 328 241 337 242 326 243 369 244 320 245 327 246 321 247 337 248 317 249 306 250 170820