#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01099/HGDP01099.cram --algo AlignmentStat HGDP/HGDP01099/QCmetrics/HGDP01099.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	405447015	405447015	1.000000	0	405232667	0.999471	60463647553	378612126	56669382252	55063080221	0.000000	0.008057	0.007406	0.000211	151.000000	402751918	0.993878	0	0.498537	0.019164	0.000083	
SECOND_OF_PAIR	405447015	405447015	1.000000	0	402777010	0.993415	57662509218	375841834	54075274342	50604342828	0.000000	0.010621	0.010017	0.000247	151.000000	402751918	0.999938	0	0.498326	0.021837	0.000080	
PAIR	810894030	810894030	1.000000	0	808009677	0.996443	118126156771	754453960	110744656594	105667423049	0.000000	0.009308	0.008680	0.000229	151.000000	805503836	0.996899	0	0.498432	0.020497	0.000082