#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP01099/HGDP01099.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01099/QCmetrics/HGDP01099.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 17.263 5.8818 17 3 0 0.069096 0.0025048 0.042366 0.0065652 0.00021047 0.12074 0.99659 0.98755 0.93836 0.70752 0.31486 0.074881 0.013343 0.0027205 0.0013399 0.00077506 0.00051469 0.00037451 0.00029038 0.00022711 0.99011 20 coverage high_quality_coverage_count 0 518596 1 267202 2 296491 3 356650 4 455235 5 622013 6 883000 7 1291796 8 1908900 9 2776013 10 3941118 11 5363093 12 6973385 13 8643046 14 10194426 15 11438513 16 12232354 17 12486573 18 12179496 19 11391954 20 10205155 21 8774339 22 7262646 23 5795049 24 4466784 25 3327516 26 2406247 27 1690346 28 1156911 29 779841 30 516092 31 341729 32 228617 33 154941 34 108067 35 79848 36 60809 37 49051 38 41074 39 35594 40 31733 41 27967 42 24919 43 23162 44 21260 45 19239 46 17607 47 16107 48 14552 49 13469 50 12467 51 11069 52 10225 53 9296 54 8510 55 8056 56 7268 57 6902 58 6406 59 5719 60 5373 61 4931 62 4552 63 4229 64 3916 65 3764 66 3380 67 3364 68 3107 69 2990 70 2708 71 2745 72 2426 73 2307 74 2206 75 2120 76 1810 77 1759 78 1655 79 1587 80 1537 81 1481 82 1408 83 1299 84 1265 85 1279 86 1186 87 1148 88 1105 89 1090 90 1084 91 1050 92 1005 93 945 94 887 95 957 96 894 97 963 98 951 99 888 100 915 101 823 102 848 103 793 104 748 105 690 106 703 107 645 108 732 109 639 110 672 111 693 112 639 113 624 114 590 115 581 116 534 117 510 118 503 119 447 120 463 121 472 122 453 123 447 124 441 125 425 126 402 127 392 128 353 129 330 130 279 131 304 132 277 133 267 134 282 135 303 136 255 137 264 138 279 139 240 140 235 141 193 142 207 143 155 144 185 145 169 146 176 147 168 148 163 149 189 150 158 151 165 152 147 153 182 154 154 155 168 156 133 157 150 158 131 159 129 160 135 161 142 162 160 163 149 164 128 165 119 166 126 167 138 168 138 169 162 170 125 171 133 172 140 173 132 174 131 175 148 176 127 177 113 178 130 179 124 180 103 181 104 182 109 183 113 184 97 185 95 186 105 187 105 188 97 189 102 190 109 191 95 192 102 193 83 194 80 195 87 196 72 197 80 198 73 199 59 200 74 201 77 202 73 203 56 204 65 205 74 206 69 207 72 208 64 209 48 210 64 211 58 212 67 213 47 214 47 215 65 216 53 217 54 218 45 219 51 220 49 221 64 222 60 223 54 224 64 225 71 226 77 227 66 228 74 229 68 230 67 231 57 232 65 233 60 234 60 235 62 236 65 237 57 238 67 239 63 240 48 241 63 242 59 243 48 244 55 245 38 246 60 247 57 248 52 249 37 250 3353