#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01101/HGDP01101.cram --algo AlignmentStat HGDP/HGDP01101/QCmetrics/HGDP01101.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	453249557	453249557	1.000000	0	453066859	0.999597	67715951367	424741785	63793187030	62543319879	0.000000	0.004791	0.004101	0.000220	151.000000	451600797	0.996764	0	0.499862	0.019414	0.000001	
SECOND_OF_PAIR	453249557	453249557	1.000000	0	451633092	0.996434	66466884045	422399687	62728892308	59367185593	0.000000	0.009437	0.008690	0.000210	151.000000	451600797	0.999928	0	0.499562	0.021009	0.000166	
PAIR	906499114	906499114	1.000000	0	904699951	0.998015	134182835412	847141472	126522079338	121910505472	0.000000	0.007092	0.006376	0.000215	151.000000	903201594	0.998344	0	0.499712	0.020211	0.000083