#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01102/HGDP01102.cram --algo AlignmentStat HGDP/HGDP01102/QCmetrics/HGDP01102.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	426617437	426617437	1.000000	0	426423556	0.999546	63733359979	398940939	59920814566	58795983202	0.000000	0.004613	0.003918	0.000221	151.000000	425209218	0.997152	0	0.499904	0.019250	0.000001	
SECOND_OF_PAIR	426617437	426617437	1.000000	0	425236393	0.996763	62600660402	396977090	58968353453	55907493875	0.000000	0.009259	0.008499	0.000210	151.000000	425209218	0.999936	0	0.499560	0.020719	0.000232	
PAIR	853234874	853234874	1.000000	0	851659949	0.998154	126334020381	795918029	118889168019	114703477077	0.000000	0.006915	0.006190	0.000216	151.000000	850418436	0.998542	0	0.499733	0.019984	0.000116