#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01103/HGDP01103.cram --algo AlignmentStat HGDP/HGDP01103/QCmetrics/HGDP01103.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	488758990	488758990	1.000000	0	488584427	0.999643	72995854042	455727505	68425953758	67056198235	0.000000	0.004837	0.004100	0.000222	151.000000	487184547	0.997135	0	0.499847	0.019518	0.000001	
SECOND_OF_PAIR	488758990	488758990	1.000000	0	487215354	0.996842	71645549674	453436440	67289452955	63551282828	0.000000	0.009866	0.009072	0.000211	151.000000	487184547	0.999937	0	0.499622	0.021256	0.000169	
PAIR	977517980	977517980	1.000000	0	975799781	0.998242	144641403716	909163945	135715406713	130607481063	0.000000	0.007328	0.006565	0.000217	151.000000	974369094	0.998534	0	0.499735	0.020386	0.000085