#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01149/HGDP01149.cram --algo AlignmentStat HGDP/HGDP01149/QCmetrics/HGDP01149.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	428129834	428129834	1.000000	0	424934651	0.992537	63513766978	397158817	59652610789	58050651993	0.000000	0.005519	0.004765	0.000215	151.000000	423375689	0.996331	0	0.499975	0.020010	0.000009	
SECOND_OF_PAIR	428129834	428129834	1.000000	0	423453373	0.989077	61774481323	394683798	58142311645	53132843545	1.000000	0.013484	0.012736	0.000202	151.000000	423375689	0.999817	0	0.499482	0.021452	0.006225	
PAIR	856259668	856259668	1.000000	0	848388024	0.990807	125288248301	791842615	117794922434	111183495538	0.000000	0.009446	0.008699	0.000208	151.000000	846751378	0.998071	0	0.499729	0.020730	0.003117