#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP01149/HGDP01149.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01149/QCmetrics/HGDP01149.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 36.696 11.732 36 5 0 0.083643 0.0017832 0.05266 0.0029742 0.016707 0.15777 0.99876 0.99617 0.99324 0.98893 0.97916 0.9456 0.83333 0.32204 0.041201 0.009834 0.0068031 0.0052137 0.0041825 0.003478 0.99767 26 coverage high_quality_coverage_count 0 3417385 1 2103419 2 1761412 3 1655736 4 1595325 5 1557408 6 1552379 7 1572383 8 1629436 9 1721681 10 1857379 11 2046571 12 2299561 13 2618129 14 3024425 15 3530596 16 4188970 17 5056102 18 6235150 19 7836299 20 10048989 21 13071727 22 17147718 23 22533635 24 29428222 25 38018430 26 48353601 27 60342726 28 73740272 29 88063069 30 102725639 31 117035410 32 130182743 33 141447713 34 150082936 35 155580977 36 157559937 37 156027376 38 151094956 39 143254151 40 132947826 41 120902652 42 107749423 43 94163268 44 80762682 45 67975560 46 56212660 47 45693830 48 36550960 49 28788630 50 22354426 51 17135280 52 12987368 53 9764911 54 7295916 55 5432516 56 4052694 57 3048786 58 2319757 59 1802748 60 1436659 61 1178489 62 995028 63 864486 64 771748 65 702928 66 648313 67 607710 68 576186 69 547345 70 523340 71 500748 72 480688 73 460829 74 443627 75 426513 76 408451 77 390854 78 373490 79 358959 80 342452 81 328436 82 314045 83 300134 84 286197 85 274608 86 263158 87 252185 88 240952 89 231642 90 223010 91 214887 92 207233 93 200942 94 195299 95 189012 96 183532 97 178286 98 174018 99 169779 100 165967 101 161697 102 157710 103 154310 104 150658 105 147658 106 143679 107 140514 108 138079 109 134451 110 131230 111 127946 112 123963 113 121385 114 117316 115 115137 116 112143 117 109421 118 106243 119 102892 120 100274 121 97162 122 94336 123 92180 124 90127 125 87546 126 84872 127 82635 128 81342 129 79318 130 77088 131 75183 132 73322 133 71649 134 69984 135 68513 136 66818 137 65572 138 64305 139 62718 140 61571 141 59754 142 58450 143 57040 144 56159 145 54844 146 53796 147 53242 148 51892 149 50787 150 49792 151 48894 152 48554 153 47215 154 46952 155 46101 156 44930 157 44471 158 43646 159 42732 160 42155 161 41278 162 40356 163 39503 164 39176 165 38412 166 37587 167 37131 168 36854 169 36246 170 35748 171 34951 172 34518 173 33804 174 33490 175 32516 176 32156 177 31566 178 31240 179 30749 180 30211 181 30185 182 29777 183 29302 184 28520 185 28195 186 27896 187 27489 188 27181 189 26368 190 26067 191 25933 192 25744 193 25019 194 24791 195 24477 196 24248 197 23713 198 23556 199 23140 200 22984 201 22328 202 22440 203 21853 204 21587 205 21344 206 20877 207 20633 208 20537 209 20367 210 19696 211 19798 212 19623 213 19358 214 18878 215 18904 216 18730 217 18209 218 18094 219 17769 220 17628 221 17232 222 17002 223 16937 224 16310 225 16369 226 16264 227 16006 228 15873 229 15530 230 15382 231 15387 232 15254 233 14827 234 14770 235 14605 236 14666 237 14248 238 13997 239 14059 240 13762 241 13533 242 13277 243 13304 244 13002 245 13119 246 12908 247 12697 248 12516 249 12327 250 2191107