#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP01149/HGDP01149.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01149/QCmetrics/HGDP01149.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 20.563 25.535 17 4 0 0.053125 0.0020139 0.070794 0.0067646 0.33222 0.46492 0.99819 0.98604 0.9087 0.68746 0.33751 0.11434 0.050806 0.031326 0.025712 0.022167 0.019449 0.017422 0.015904 0.014819 0.98845 19 coverage high_quality_coverage_count 0 42848 1 42814 2 52166 3 74659 4 117393 5 181349 6 262219 7 355338 8 457109 9 572104 10 702282 11 858938 12 1031638 13 1223192 14 1413187 15 1571313 16 1677906 17 1721869 18 1696091 19 1604477 20 1449925 21 1258508 22 1052543 23 849679 24 664273 25 506929 26 375453 27 275161 28 199529 29 144602 30 104887 31 78787 32 60564 33 47835 34 39177 35 32949 36 28629 37 24930 38 22466 39 20209 40 18350 41 16986 42 15385 43 14017 44 12935 45 12161 46 11337 47 10915 48 10583 49 10015 50 9652 51 9269 52 8753 53 8749 54 8324 55 8166 56 8097 57 7725 58 7578 59 7477 60 7324 61 7168 62 6881 63 6628 64 6494 65 6312 66 6145 67 5961 68 5792 69 5541 70 5482 71 5281 72 4990 73 4863 74 4835 75 4935 76 4639 77 4500 78 4255 79 4130 80 4124 81 4028 82 3727 83 3702 84 3740 85 3531 86 3320 87 3318 88 3312 89 3088 90 2846 91 2887 92 2763 93 2586 94 2561 95 2474 96 2454 97 2387 98 2406 99 2272 100 2092 101 2083 102 2009 103 1964 104 1896 105 1982 106 1909 107 1871 108 1803 109 1849 110 1774 111 1647 112 1741 113 1651 114 1542 115 1500 116 1516 117 1581 118 1521 119 1548 120 1518 121 1424 122 1417 123 1361 124 1322 125 1369 126 1331 127 1274 128 1316 129 1227 130 1285 131 1218 132 1231 133 1194 134 1198 135 1206 136 1175 137 1167 138 1153 139 1200 140 1218 141 1114 142 1139 143 1183 144 1210 145 1203 146 1118 147 1153 148 1159 149 1209 150 1111 151 1187 152 1103 153 1148 154 1099 155 1129 156 1093 157 1076 158 1096 159 1063 160 1061 161 1079 162 1012 163 1030 164 1052 165 1034 166 1021 167 1061 168 1006 169 965 170 1027 171 1001 172 977 173 940 174 978 175 916 176 923 177 942 178 921 179 890 180 946 181 931 182 896 183 852 184 898 185 930 186 853 187 886 188 816 189 814 190 828 191 779 192 794 193 785 194 776 195 760 196 740 197 726 198 718 199 694 200 676 201 628 202 743 203 617 204 641 205 642 206 605 207 587 208 642 209 632 210 640 211 593 212 633 213 604 214 601 215 633 216 598 217 623 218 622 219 625 220 634 221 558 222 594 223 603 224 612 225 580 226 575 227 621 228 561 229 574 230 574 231 622 232 607 233 637 234 576 235 568 236 571 237 542 238 598 239 590 240 601 241 571 242 570 243 580 244 576 245 526 246 563 247 557 248 554 249 526 250 200132