#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01151/HGDP01151.cram --algo AlignmentStat HGDP/HGDP01151/QCmetrics/HGDP01151.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	417805595	417805595	1.000000	0	413890243	0.990629	61860775618	387472200	58185037915	56693142144	0.000000	0.005088	0.004381	0.000219	151.000000	412570335	0.996811	0	0.500052	0.019973	0.000005	
SECOND_OF_PAIR	417805595	417805595	1.000000	0	412661070	0.987687	60389557975	385314835	56903658274	52706467681	0.000000	0.011627	0.010889	0.000209	151.000000	412570335	0.999780	0	0.499406	0.021892	0.002007	
PAIR	835611190	835611190	1.000000	0	826551313	0.989158	122250333593	772787035	115088696189	109399609825	0.000000	0.008318	0.007599	0.000214	151.000000	825140670	0.998293	0	0.499729	0.020931	0.001006