#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01152/HGDP01152.cram --algo AlignmentStat HGDP/HGDP01152/QCmetrics/HGDP01152.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	344735910	344735910	1.000000	0	344110785	0.998187	51431206483	321586155	48271691072	47018613306	0.000000	0.005102	0.004413	0.000215	151.000000	342697606	0.995893	0	0.500025	0.020568	0.000003	
SECOND_OF_PAIR	344735910	344735910	1.000000	0	342727647	0.994174	50154948142	319229799	47143435746	43664729656	0.000000	0.011969	0.011225	0.000206	151.000000	342697606	0.999912	0	0.499096	0.022898	0.000558	
PAIR	689471820	689471820	1.000000	0	686838432	0.996181	101586154625	640815954	95415126818	90683342962	0.000000	0.008492	0.007779	0.000210	151.000000	685395212	0.997899	0	0.499562	0.021731	0.000281