#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01155/HGDP01155.cram --algo AlignmentStat HGDP/HGDP01155/QCmetrics/HGDP01155.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	404574001	404574001	1.000000	0	403835501	0.998175	60355135290	378368545	56821740558	55378158718	0.000000	0.004959	0.004267	0.000218	151.000000	401795487	0.994948	0	0.500050	0.019343	0.000003	
SECOND_OF_PAIR	404574001	404574001	1.000000	0	401829645	0.993217	58635873335	375491710	55324061696	51130833853	0.000000	0.011845	0.011148	0.000206	151.000000	401795487	0.999915	0	0.499425	0.020738	0.001017	
PAIR	809148002	809148002	1.000000	0	805665146	0.995696	118991008625	753860255	112145802254	106508992571	0.000000	0.008352	0.007661	0.000212	151.000000	803590974	0.997426	0	0.499738	0.020039	0.000510