#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01161/HGDP01161.cram --algo AlignmentStat HGDP/HGDP01161/QCmetrics/HGDP01161.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	343838978	343838978	1.000000	0	343478082	0.998950	51334816994	321812030	48321120753	47045940995	0.000000	0.005184	0.004466	0.000217	151.000000	341942372	0.995529	0	0.500015	0.020659	0.000002	
SECOND_OF_PAIR	343838978	343838978	1.000000	0	341967676	0.994558	50084624494	319371272	47202357796	43640452816	0.000000	0.012203	0.011454	0.000207	151.000000	341942372	0.999926	0	0.499075	0.021893	0.000346	
PAIR	687677956	687677956	1.000000	0	685445758	0.996754	101419441488	641183302	95523478549	90686393811	0.000000	0.008650	0.007919	0.000212	151.000000	683884744	0.997723	0	0.499546	0.021275	0.000174