#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01162/HGDP01162.cram --algo AlignmentStat HGDP/HGDP01162/QCmetrics/HGDP01162.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	652006486	652006486	1.000000	0	650177158	0.997194	97116045182	609026698	91434472256	88955244123	0.000000	0.005253	0.004516	0.000220	151.000000	645174615	0.992306	0	0.500116	0.020853	0.000001	
SECOND_OF_PAIR	652006486	652006486	1.000000	0	645236303	0.989616	93484273270	602391524	88185275672	80065219978	1.000000	0.014253	0.013549	0.000207	151.000000	645174615	0.999904	0	0.499318	0.022468	0.000150	
PAIR	1304012972	1304012972	1.000000	0	1295413461	0.993405	190600318452	1211418222	179619747928	169020464101	0.000000	0.009667	0.008950	0.000214	151.000000	1290349230	0.996091	0	0.499719	0.021657	0.000075